PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_80E8CBB73.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 336aa    MW: 38556.9 Da    PI: 8.4677
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_80E8CBB73.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.72.9e-1152131190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e GF +r  ks+ +  n++  +++ vC + gk+  e+++         + r++C   +++ ++kd+ w++++ +  HnH+
  Traes_3DL_80E8CBB73.1  52 DFYNLYSWEKGFGIRYGKSRLN-VNRSKCMQEIVCGCAGKPIIENTR---------SCRCECPSLIRLLRTKDNGWYIAEHRDGHNHA 129
                            6*****************9998.666688999********9987655.........99****************************** PP

                   FAR1  89 la 90 
                            l+
  Traes_3DL_80E8CBB73.1 130 LS 131
                            97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-852131IPR004330FAR1 DNA binding domain
PfamPF105512.0E-23253335IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRVGAAAPGR PPCADRITAL EQTVREFADH PRDIVMVPKI GTSFDTLVEA YDFYNLYSWE  60
KGFGIRYGKS RLNVNRSKCM QEIVCGCAGK PIIENTRSCR CECPSLIRLL RTKDNGWYIA  120
EHRDGHNHAL SQTYGQTIHW PSHKHIDVYS KDLVKQLRQN NVNLSKVYNI IGSFFGKMEN  180
VPFTKRALRN LCGKISREQA EDDVRKTMEV FHDLCSKDPQ FTYRVQADKE GRISNLMWAT  240
GNSRLQYNFF GDVITFDTTY RTNLYDMPFG LFVGVNNHFQ SIILAGVLVR HETEETFEWV  300
FSEFVRIMGG RAPQTILTDQ NRAMEVAISN VMPNTA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2955770.0JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-161PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5DBA80.0W5DBA8_WHEAT; Uncharacterized protein
STRINGMLOC_43923.31e-150(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.13e-45FAR1-related sequence 10
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]